SNP Profiles matching NA 702

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 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
2._NA_286
__CCGGCC_AACCAACC__AA_
3._NA_286
__CCGGCC_AACCAACC__AA_
4._NA_286
__CCGGCC_AACCAACC__AA_
5._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
6._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
7._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
8._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
9._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
10._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
11._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
12._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
13._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
14._POUND_5_/C
__CCGGCC_AA_AGCC__AA_
15._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
16._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
17._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
18._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
19._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
21._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
22._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
23._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
24._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
25._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
26._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
27._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
28._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
29._POUND_2_/A
__CCGGCC_AACCAACC__AA_
30._POUND_2_/A
__CCGGCC_AACCAACC__AA_
31._POUND_2_/A
__CCGGCC_AACCAACC__AA_
32._POUND_2_/A
__CCGGCC_AACCAACC__AA_
33._POUND_2_/A
__CCGGCC_AACCAACC__AA_
34._POUND_2_/A
__CCGGCC_AACCAACC__AA_
35._POUND_2_/A
__CCGGCC_AA_AACC__AA_
36._POUND_25_/A
__CCGGCC_AA_AACC__AA_
 1516171819202122232425262728
_Input profile
AACCCCGGGGAACCCCTTGGGGTTCCGG
1._RUQ_801
AACCCCGGGGAACCCCTTGGGGTTCCGG
2._NA_286
AACCCCGGGGAA_CC_GG___GG
3._NA_286
AACCCCGGGGAA_CC_GG___GG
4._NA_286
AACCCCGGGGAA_CC_GG___GG
5._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
6._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
7._RUQ_897
AACCCTGGGGAACCCCTTGGGGTTCCGG
8._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
9._RUQ_877
AACC-GGGGAACCCCTTGGGGTTCCCG
10._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
11._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
12._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
13._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
14._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
15._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
16._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
17._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
18._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
19._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
20._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
21._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
22._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
23._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
24._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
25._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
26._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
27._RUQ_1504
AACCTTGGGGAACCCCTTGGGGTTACGG
28._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
29._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
30._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
31._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
32._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
33._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
34._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
35._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
36._POUND_25_/A
AACCTTGGGGAA_CC_GG___GG
 2930313233343536373839404142
_Input profile
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
1._RUQ_801
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
2._NA_286
_CCGG_CC___TT__TTGGAA
3._NA_286
_CCGG_CC___TT__TTGGAA
4._NA_286
_CCGG_CC______TTGGAA
5._RUQ_468
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
6._GC-01-101-5-18
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
7._RUQ_897
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
8._GC-01-101-5-18
CCCCGGCCCCGGGGTT_TTCCTTGGAA
9._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
10._POUND_5_/C
_CCGG_CC___TT__TTGGAA
11._POUND_5_/C
_CCGG_CC___TT__TTGGAA
12._POUND_5_/C
_CCGG_CC___TT__TTGGAA
13._POUND_5_/C
_CCGG_CC___TT__TTGGAA
14._POUND_5_/C
_CCGG_CC___TT__TTGGAA
15._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
16._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
17._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
18._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
19._RUQ_515
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
20._RUQ_1588
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
21._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
22._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
23._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
24._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
25._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
26._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
27._RUQ_1504
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
28._RUQ_1334
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
29._POUND_2_/A
_CCGG_CC___TT__TTCCAA
30._POUND_2_/A
_CCGG_CC___TT__TTCCAA
31._POUND_2_/A
_CCGG_CC___TT__TTCCAA
32._POUND_2_/A
_CCGG_CC___TT__TTCCAA
33._POUND_2_/A
_CCGG_CC___TT__TTCCAA
34._POUND_2_/A
_CCGG_CC___TT__TTCCAA
35._POUND_2_/A
_CCGG_CC___TT__TTCCAA
36._POUND_25_/A
_CCGG_CC___TT__TTCCAA

Input profile: NA_702 RUQ_1587

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_149 RUQ_801

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_286

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

3._NA_286

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

4._NA_286

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._NA_756 RUQ_468

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_286 GC-01-101-5-18

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._CRU_70 RUQ_897

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._NA_286 GC-01-101-5-18

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

9._CRU_100 RUQ_877

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

12._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

13._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

14._POUND_5_/C

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

15._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._POUND_5_/C GC-08-165-4-08

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._IMC_27 RUQ_515

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_710 RUQ_1588

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._NA_232 RUQ_1504

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._NA_916 RUQ_1334

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

31._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

32._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

33._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

34._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

35._POUND_2_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

36._POUND_25_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484